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1

Remembering Max Delbrück: The scientist and the man

Makkuni Jayaram

Journal:

Year:

1999

Language:

english

File:

PDF, 1.09 MB

english, 1999

2

Mechanisms for Chromosome and Plasmid Segregation

Ghosh, Santanu Kumar, Hajra, Sujata, Paek, Andrew, Jayaram, Makkuni

Journal:

Annual Review of Biochemistry

Year:

2006

Language:

english

File:

PDF, 735 KB

english, 2006

3

An Overview of Tyrosine Site-specific Recombination: From an Flp Perspective

Jayaram, Makkuni, Rowley, Paul A, Fan, Hsui-Fang, Kachroo, Aashiq H, Voziyanov, Yuri, Guga, Piotr, Ma, Chien-Hui

Journal:

Microbiology Spectrum

Year:

2015

Language:

english

File:

PDF, 5.22 MB

english, 2015

4

Single-Molecule Tethered Particle Motion: Stepwise Analyses of Site-Specific DNA Recombination

Fan, Hsiu-Fang, Ma, Chien-Hui, Jayaram, Makkuni

Journal:

Year:

2018

Language:

english

File:

PDF, 2.45 MB

english, 2018

5

A Flp-SUMO hybrid recombinase reveals multi-layered copy number control of a selfish DNA element through post-translational modification

Ma, Chien-Hui, Su, Bo-Yu, Maciaszek, Anna, Fan, Hsiu-Fang, Guga, Piotr, Jayaram, Makkuni, Malik, Harmit S.

Journal:

Year:

2019

Language:

english

File:

PDF, 4.87 MB

english, 2019

6

The integrase family of recombinases: organization and function of the active site

Ian Grainge, Makkuni Jayaram

Journal:

Molecular Microbiology

Year:

1999

Language:

english

File:

PDF, 317 KB

english, 1999

7

Inducible expression ofREP1causes inducible expression of the 2 micron circle stability system

Makkuni Jayaram, Seizo Sumida, Lih Jiuan Young

Journal:

Current Genetics

Year:

1986

Language:

english

File:

PDF, 728 KB

english, 1986

8

Stable propagation of ‘selfish’ genetic elements

Soundarapandian Velmurugan, Shwetal Mehta, Dina Uzri, Makkuni Jayaram

Journal:

Journal of Biosciences

Year:

2003

Language:

english

File:

PDF, 600 KB

english, 2003

9

Split target specificity of ResT: a design for protein delivery, site selectivity and regulation of enzyme activity?

Makkuni Jayaram

Journal:

Molecular Microbiology

Year:

2007

Language:

english

File:

PDF, 229 KB

english, 2007

10

Active site electrostatics protect genome integrity by blocking abortive hydrolysis during DNA recombination

Ma, Chien-Hui, Rowley, Paul A, Macieszak, Anna, Guga, Piotr, Jayaram, Makkuni

Journal:

The EMBO Journal

Year:

2009

Language:

english

File:

PDF, 981 KB

english, 2009

11

Metabolic engineering without plasmids

Kachroo, Aashiq H, Jayaram, Makkuni, Rowley, Paul A

Journal:

Nature Biotechnology

Year:

2009

Language:

english

File:

PDF, 685 KB

english, 2009

12

TheIntfamily of site-specific recombinases: Some thoughts on a general reaction mechanism

Makkuni Jayaram

Journal:

Journal of Genetics

Year:

1988

Language:

english

File:

PDF, 471 KB

english, 1988

13

Segregation of the yeast plasmid: similarities and contrasts with bacterial plasmid partitioning

Makkuni Jayaram, Shwetal Mehta, Dina Uzri, Soundarapandian Velmurugan

Journal:

Year:

2004

Language:

english

File:

PDF, 970 KB

english, 2004

14

Probing Flp: a new approach to analyze the structure of a DNA recognizing protein by combining the genetic algorithm, mutagenesis and non-canonical DNA target sites

Pratibha Saxena, Ilson Whang, Yuri Voziyanov, Cecil Harkey, Patrick Argos, Makkuni Jayaram, Thomas Dandekar

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology

Year:

1997

Language:

english

File:

PDF, 824 KB

english, 1997

15

Return to sobriety after the catalytic party

Makkuni Jayaram, Jehee Lee

Journal:

Trends in Genetics

Year:

1995

Language:

english

File:

PDF, 375 KB

english, 1995

16

DNA-Protein Cooperativity in the Assembly and Stabilization of Mu Strand Transfer Complex: Relevance of DNA Phasing and att Site Cleavage

Soon-Young Namgoong, Makkuni Jayaram, Keetae Kim, Rasika M. Harshey

Journal:

Journal of Molecular Biology

Year:

1994

File:

PDF, 1.10 MB

1994

17

Analyses of the First Chemical Step in Flp Site-specific Recombination: Synapsis May Not be a Pre-requisite for Strand Cleavage

Yuri Voziyanov, Jehee Lee, Ilson Whang, Joonsoo Lee, Makkuni Jayaram

Journal:

Journal of Molecular Biology

Year:

1996

Language:

english

File:

PDF, 1.09 MB

english, 1996

18

Assembly and Orientation of Flp Recombinase Active Sites on Two-, Three- and Four-armed DNA Substrates: Implications for a Recombination Mechanism

Jehee Lee, Ilson Whang, Makkuni Jayaram

Journal:

Journal of Molecular Biology

Year:

1996

Language:

english

File:

PDF, 1.40 MB

english, 1996

19

The yeast site-specific recombinase Flp mediates alcoholysis and hydrolysis of the strand cleavage product: mimicking the strand-joining reaction with non-DNA nucleophiles

Birgitta R Knudsen, Kristina Dahlstrøm, Ole Westergaard, Makkuni Jayaram

Journal:

Journal of Molecular Biology

Year:

1997

Language:

english

File:

PDF, 691 KB

english, 1997

20

Mutational analysis of domain IIβ of bacteriophage Mu transposase: domains IIα and IIβ belongs to different catalytic complementation groups

Soon-Young Namgoong, Keetae Kim, Pratibha Saxena, Jin-Ying Yang, Makkuni Jayaram, David P Giedroc, Rasika M Harshey

Journal:

Journal of Molecular Biology

Year:

1998

Language:

english

File:

PDF, 392 KB

english, 1998

21

Resolution of tethered antiparallel and parallel Holliday junctions by the Flp site-specific recombinase

Jehee Lee, Gena Tribble, Makkuni Jayaram

Journal:

Journal of Molecular Biology

Year:

2000

Language:

english

File:

PDF, 691 KB

english, 2000

22

Geometry of site alignment during Int family recombination: antiparallel synapsis by the Flp recombinase

Ian Grainge, Dorothy Buck, Makkuni Jayaram

Journal:

Journal of Molecular Biology

Year:

2000

Language:

english

File:

PDF, 495 KB

english, 2000

23

DNA recombination and RNA cleavage activities of the Flp protein: roles of two histidine residues in the orientation and activation of the nucleophile for strand cleavage

Ian Grainge, Jehee Lee, Chong-Jun Xu, Makkuni Jayaram

Journal:

Journal of Molecular Biology

Year:

2001

Language:

english

File:

PDF, 693 KB

english, 2001

24

Functional analysis of Box II mutations in yeast site-specific recombinases Flp and R: Significance of amino acid conservation within the Int family and the yeast sub-family

Jehee Lee, Marie-Claude Serre, Sang-Hwa Yang, Ilson Whang, Hiroyuki Araki, Yasuji Oshima, Makkuni Jayaram

Journal:

Journal of Molecular Biology

Year:

1992

Language:

english

File:

PDF, 8.00 MB

english, 1992

25

Half-site recombinations mediated by yeast site-specific recombinases Flp and R

Marie-Claude Serre, Barbara R. Evans, Hiroyuki Araki, Yasuji Oshima, Makkuni Jayaram

Journal:

Journal of Molecular Biology

Year:

1992

Language:

english

File:

PDF, 15.68 MB

english, 1992

26

Half-site strand transfer by step-arrest mutants of yeast site-specific recombinase Flp

Marie-Claude Serre, Makkuni Jayaram

Journal:

Journal of Molecular Biology

Year:

1992

Language:

english

File:

PDF, 6.89 MB

english, 1992

27

Site-specific recombinase, R, encoded by yeast plasmid pSR1

Hiroyuki Araki, Noriyuki Nakanishi, Barbara R. Evans, Hiroaki Matsuzaki, Makkuni Jayaram, Yasuji Oshima

Journal:

Journal of Molecular Biology

Year:

1992

Language:

english

File:

PDF, 4.79 MB

english, 1992

28

Recombination of Hybrid Target Sites by Binary Combinations of Flp Variants: Mutations that Foster Interprotomer Collaboration and Enlarge Substrate Tolerance

Jay H Konieczka, Andrew Paek, Makkuni Jayaram, Yuri Voziyanov

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 1.70 MB

english, 2004

29

Protein-induced Local DNA Bends Regulate Global Topology of Recombination Products

Quan Du, Alexei Livshits, Agnieszka Kwiatek, Makkuni Jayaram, Alexander Vologodskii

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 852 KB

english, 2007

30

Unveiling Hidden Catalytic Contributions of the Conserved His/Trp-III in Tyrosine Recombinases: Assembly of a Novel Active Site in Flp Recombinase Harboring Alanine at this Position

Chien-Hui Ma, Agnieszka Kwiatek, Swetha Bolusani, Yuri Voziyanov, Makkuni Jayaram

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 1.74 MB

english, 2007

31

Interactions of Phage Mu Enhancer and Termini that Specify the Assembly of a Topologically Unique Interwrapped Transpososome

Zhiqi Yin, Asaka Suzuki, Zheng Lou, Makkuni Jayaram, Rasika M. Harshey

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 1.52 MB

english, 2007

32

Symmetric DNA Sites are Functionally Asymmetric Within Flp and Cre Site-specific DNA Recombination Synapses

Ian Grainge, Shailja Pathania, Alexander Vologodskii, Rasika M. Harshey, Makkuni Jayaram

Journal:

Journal of Molecular Biology

Year:

2002

Language:

english

File:

PDF, 503 KB

english, 2002

33

Stepwise Manipulation of DNA Specificity in Flp Recombinase: Progressively Adapting Flp to Individual and Combinatorial Mutations in its Target Site

Yuri Voziyanov, Jay H. Konieczka, A. Francis Stewart, Makkuni Jayaram

Journal:

Journal of Molecular Biology

Year:

2003

Language:

english

File:

PDF, 1.39 MB

english, 2003

34

Positional Information within the Mu Transposase Tetramer: Catalytic Contributions of Individual Monomers

Jin-Ying Yang, Makkuni Jayaram, Rasika M Harshey

Journal:

Year:

1996

Language:

english

File:

PDF, 258 KB

english, 1996

35

Path of DNA within the Mu Transpososome: Transposase Interactions Bridging Two Mu Ends and the Enhancer Trap Five DNA Supercoils

Shailja Pathania, Makkuni Jayaram, Rasika M Harshey

Journal:

Year:

2002

Language:

english

File:

PDF, 475 KB

english, 2002

36

Unveiling Two Distinct Ribonuclease Activities and a Topoisomerase Activity in a Site-Specific DNA Recombinase

Chong-jun Xu, Ian Grainge, Jehee Lee, Rasika M Harshey, Makkuni Jayaram

Journal:

Year:

1998

Language:

english

File:

PDF, 478 KB

english, 1998

37

Structural Alterations and Conformational Dynamics in Holliday Junctions Induced by Binding of a Site-Specific Recombinase

Jehee Lee, Yuri Voziyanov, Shailja Pathania, Makkuni Jayaram

Journal:

Year:

1998

Language:

english

File:

PDF, 845 KB

english, 1998

38

Recombination within the yeast plasmid 2μ circle is site-specific

James R. Broach, Vicki R. Guarascio, Makkuni Jayaram

Journal:

Year:

1982

Language:

english

File:

PDF, 1.56 MB

english, 1982

39

Tyr60 variants of Flp recombinase generate conformationally altered protein-DNA complexes: Differential activity in full-site and half-site recombinations

Jing-Wen Chen, Barbara R. Evans, Lei Zheng, Makkuni Jayaram

Journal:

Journal of Molecular Biology

Year:

1991

Language:

english

File:

PDF, 9.53 MB

english, 1991

40

DNA cleavage in trans by the active site tyrosine during Flp recombination: Switching protein partners before exchanging strands

Jing-Wen Chen, Jehee Lee, Makkuni Jayaram

Journal:

Year:

1992

Language:

english

File:

PDF, 2.65 MB

english, 1992

41

Light-induced carotene synthesis in Phycomyces

Makkuni Jayaram, David Presti, Max Delbrück

Journal:

Experimental Mycology

Year:

1979

Language:

english

File:

PDF, 832 KB

english, 1979

42

The 2 micron plasmid of Saccharomyces cerevisiae: A miniaturized selfish genome with optimized functional competence

Chan, Keng-Ming, Liu, Yen-Ting, Ma, Chien-Hui, Jayaram, Makkuni, Sau, Soumitra

Journal:

Year:

2013

Language:

english

File:

PDF, 2.06 MB

english, 2013

43

[Progress in Nucleic Acid Research and Molecular Biology] Progress in Nucleic Acid Research and Molecular Biology Volume 77 Volume 77 || Site-Specific Recombination and Partitioning Systems in the Stable High Copy Propagation of the 2-Micron Yeast Plasmid

Jayaram, Makkuni

Year:

2004

Language:

english

File:

PDF, 1.30 MB

english, 2004

44

Organization of DNA Partners and Strand Exchange Mechanisms during Flp Site-Specific Recombination Analyzed by Difference Topology, Single Molecule FRET and Single Molecule TPM

Ma, Chien-Hui, Liu, Yen-Ting, Savva, Christos G., Rowley, Paul A., Cannon, Brian, Fan, Hsiu-Fang, Russell, Rick, Holzenburg, Andreas, Jayaram, Makkuni

Journal:

Journal of Molecular Biology

Year:

2014

Language:

english

File:

PDF, 2.65 MB

english, 2014

45

Bending-incompetent variants of Flp recombinase mediate strand transfer in half-site recombinations: role of DNA bending in recombination

Jing-Wen, Chen, Evans, Barbara, Rosenfeldt, Hans, Jayaram, Makkuni

Journal:

Year:

1992

Language:

english

File:

PDF, 3.26 MB

english, 1992

46

Chitin synthase-encoding gene(s) of the Zygomycete fungus Phycomyces blakesleeanus

Atsushi, Miyazaki, Momany, Michelle, Szaniszlo, Paul J., Jayaram, Makkuni, Tamotsu, Ootaki

Journal:

Year:

1993

Language:

english

File:

PDF, 838 KB

english, 1993

47

Phosphoryl transfer in Flp recombination: a template for strand transfer mechanisms

Jayaram, Makkuni

Journal:

Trends in Biochemical Sciences

Year:

1994

Language:

english

File:

PDF, 546 KB

english, 1994

48

Rapid localization and characterization of random mutations within the 2μ circle site-specific recombinase: a general strategy for analysis of protein function

Govind, Nadathur S., Jayaram, Makkuni

Journal:

Year:

1987

File:

PDF, 32 KB

1987

49

Rapid localization and characterization of random mutations within the 2μ circle site-specific recombinase: A general strategy for analysis of protein function

Govind, Nadathur S., Jayaram, Makkuni

Journal:

Year:

1987

Language:

english

File:

PDF, 2.06 MB

english, 1987

50

Structural organization of the TRP1 gene of Phycomyces blakesleeanus: implications for evolutionary gene fusion in fungi

Choi, Hyoung T., Revuelta, Jose L., Sadhu, Chanchal, Jayaram, Makkuni

Journal:

Year:

1988

Language:

english

File:

PDF, 1.13 MB

english, 1988